Why do we need absolute paths everywhere here?
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@ -28,7 +28,7 @@ def main():
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parser.add_argument("-alpha", "--alphabet-format", help="Bool. Print in format for alphabet.txt", action="store_true")
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parser.add_argument("-alpha", "--alphabet-format", help="Bool. Print in format for alphabet.txt", action="store_true")
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parser.add_argument("-unicode", "--disable-unicode-variants", help="Bool. DISABLE check for unicode consistency (use with --alphabet-format)", action="store_true")
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parser.add_argument("-unicode", "--disable-unicode-variants", help="Bool. DISABLE check for unicode consistency (use with --alphabet-format)", action="store_true")
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args = parser.parse_args()
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args = parser.parse_args()
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in_files = [os.path.abspath(i) for i in args.csv_files.split(",")]
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in_files = args.csv_files.split(",")
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print("### Reading in the following transcript files: ###")
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print("### Reading in the following transcript files: ###")
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print("### {} ###".format(in_files))
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print("### {} ###".format(in_files))
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